PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G182800.1
Common NameB456_006G182800, LOC105799952
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 268aa    MW: 30075.7 Da    PI: 8.1987
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G182800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.11.5e-311266155
             G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                        k+rlrWt+eLH+rF +av+qLGG+++AtPk il++m+v+gLt++hvkSHLQk+R+
  Gorai.006G182800.1 12 KERLRWTQELHDRFEQAVNQLGGPDRATPKGILKAMGVDGLTIYHVKSHLQKFRI 66
                        68****************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.335969IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-291166IPR009057Homeodomain-like
SuperFamilySSF466893.23E-181166IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-251266IPR006447Myb domain, plants
PfamPF002492.1E-91464IPR001005SANT/Myb domain
PfamPF143793.0E-798138IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MRRPSRADGL AKERLRWTQE LHDRFEQAVN QLGGPDRATP KGILKAMGVD GLTIYHVKSH  60
LQKFRILKFV PETNTKGKFE RRNISEILPN FGTTSGAQLN EALQLYMEAQ RKQGDDKLQV  120
RRNLKIKFEA QVRYFERIAG EHRNRVTPTK ATKSLSPISL PSLCEESESN SKDFETDSEA  180
DKNEIESGER IQALKRAGIV EDNSASSSSS SSSSMYAFPL SFSADGYEYD DQNMLLNGGE  240
RLSYTANDIS FPWNIPVCSS PLVPSFM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276361e-108HQ527636.1 Gossypium herbaceum clone NBRI_B_EYI1BW404IW7BW simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486229.10.0PREDICTED: protein PHR1-LIKE 1-like
TrEMBLA0A0D2QC550.0A0A0D2QC55_G
STRINGPOPTR_0006s10190.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM168021011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-45G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]